Mining therapeutic and prognostic significance of STATs in renal cell carcinoma with bioinformatics analysis

Genomics. 2020 Nov;112(6):4100-4114. doi: 10.1016/j.ygeno.2020.06.032. Epub 2020 Jul 5.

Abstract

Renal cell carcinoma is one of the most common malignancies with high morbidity and mortality. STAT proteins play a significant role in cell biological behavior and immune response associated with cancer progression. In our study, the datasets analyzed for the expression and potential functions can be found in several bioinformatics analysis tools. We found that STAT1/2/4/6 were upregulated in RCC while STAT3/5B were downregulated. The expression of STAT2/4/5B were significantly associated with the pathological stage of RCC patients. RCC patients with high expression of STAT2/4 and low/medium expression of STAT5B had a poor overall survival. The function of STATs and the neighboring genes mainly enriched in JAK-STAT signaling pathway and NOD-like receptor signaling pathway. Several transcription factor, kinase, and miRNA targets were identified. Close correlations were obtained between immune cell infiltration and STATs in RCC. Our results have provided novel insights for the selection of immunotherapeutic targets and prognostic biomarkers.

Keywords: Bioinformatics analysis; Biomarker; Renal cell carcinoma; STATs.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carcinoma, Renal Cell / genetics*
  • Carcinoma, Renal Cell / mortality
  • Carcinoma, Renal Cell / pathology
  • Carcinoma, Renal Cell / therapy
  • Computational Biology
  • Data Mining
  • Drug Resistance, Neoplasm
  • Gene Expression Regulation, Neoplastic
  • Humans
  • Kidney Neoplasms / genetics*
  • Kidney Neoplasms / mortality
  • Kidney Neoplasms / pathology
  • Kidney Neoplasms / therapy
  • Lymphocytes, Tumor-Infiltrating
  • MicroRNAs / genetics
  • MicroRNAs / metabolism
  • Prognosis
  • Protein Interaction Mapping
  • Protein Kinases / genetics
  • RNA, Messenger / metabolism
  • STAT Transcription Factors / genetics*
  • STAT Transcription Factors / metabolism
  • Signal Transduction
  • Transcription Factors / genetics

Substances

  • MicroRNAs
  • RNA, Messenger
  • STAT Transcription Factors
  • Transcription Factors
  • Protein Kinases