Directed evolution of high-affinity antibody mimics using mRNA display

Chem Biol. 2002 Aug;9(8):933-42. doi: 10.1016/s1074-5521(02)00187-4.

Abstract

We constructed a library of >10(12) unique, covalently coupled mRNA-protein molecules by randomizing three exposed loops of an immunoglobulin-like protein, the tenth fibronectin type III domain (10Fn3). The antibody mimics that bound TNF-alpha were isolated from the library using mRNA display. Ten rounds of selection produced 10Fn3 variants that bound TNF-alpha with dissociation constants (K(d)) between 1 and 24 nM. After affinity maturation, the lowest K(d) measured was 20 pM. Selected antibody mimics were shown to capture TNF-alpha when immobilized in a protein microarray. 10Fn3-based scaffold libraries and mRNA-display allow the isolation of high-affinity, specific antigen binding proteins; potential applications of such binding proteins include diagnostic protein microarrays and protein therapeutics.

MeSH terms

  • Amino Acid Sequence
  • Antibodies / chemistry*
  • Antibodies / metabolism
  • Combinatorial Chemistry Techniques
  • Directed Molecular Evolution / methods*
  • Fibronectins / chemistry
  • Fibronectins / genetics*
  • Fibronectins / metabolism
  • Humans
  • Molecular Mimicry*
  • Molecular Sequence Data
  • Protein Array Analysis
  • Protein Binding
  • Protein Structure, Tertiary
  • RNA, Messenger
  • Tumor Necrosis Factor-alpha / metabolism

Substances

  • Antibodies
  • Fibronectins
  • RNA, Messenger
  • Tumor Necrosis Factor-alpha