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Antibody-Based Microarrays

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Book cover Microchip Methods in Diagnostics

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 509))

Summary

Antibody-based microarrays are a new powerful proteomic technology that can be used to generate rapid and detailed expression profiles of defined sets of protein analytes in complex samples as well as high-resolution portraits of entire proteomes. Miniaturized micro- and nanoarrays can be printed with numerous antibodies carrying the desired specificities. Multiplexed and ultra-sensitive assays, specifically targeting several analytes in a single experiment, can be performed, while consuming only minute amounts of the sample. The array images generated can then be converted into protein expression profiles, or maps, revealing the detailed composition of the sample. This promising proteomic research tool will thus provide unique opportunities for e.g. disease proteomics, biomarker discovery, disease diagnostics, and patient stratification. This review describes the antibody-based microarray technology and applications thereof.

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References

  1. Angenendt P. (2005) Progress in protein and antibody microarray technology. Drug Discov Today 10 (7), 503 –511.

    CAS  Google Scholar 

  2. Haab BB. (2003) Methods and applications of antibody microarrays in cancer research. Proteomics 3 (11), 2116 –2122.

    CAS  Google Scholar 

  3. Kingsmore SF. (2006) Multiplexed protein measurement:technologies and applications of protein and antibody arrays. Nat Rev Drug Discov 5, 310 –320.

    CAS  Google Scholar 

  4. Wingren C, Borrebaeck CAK. (2007) Progress in miniaturization of protein arrays —a step closer to high-density nanoarrays. Drug Discov Today 12, 813 –819.

    CAS  Google Scholar 

  5. Wingren C, Borrebaeck CAK. (2004) High-throughput proteomics using antibody microarrays. Expert Rev Proteomics 1 (3), 355 –364.

    CAS  Google Scholar 

  6. Wingren C, Borrebaeck CAK. (2006) Antibody microarrays:current status and key technological advances. OMICS 10 (3), 411 –427.

    CAS  Google Scholar 

  7. Wingren C, Borrebaeck CAK. (2007) High-throughput proteomic using antibody microarrays —un update. Expert Rev Mol Diagn 7 (5), 673 –686.

    Google Scholar 

  8. Borrebaeck CAK, Ekstrom S, Hager AC, Nilsson J, Laurell T, Marko-Varga G. (2001) Protein chips based on recombinant antibody fragments:a highly sensitive approach as detected by mass spectrometry. Biotechniques 30 (5), 1126 –1130, 1132.

    CAS  Google Scholar 

  9. Haab BB, Dunham MJ, Brown PO. (2001) Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2 (2), RESEARCH0004.

    Google Scholar 

  10. MacBeath G, Schreiber SL. (2000) Printing proteins as microarrays for high-throughput function determination. Science 289 (5485), 1760 –1763.

    CAS  Google Scholar 

  11. Borrebaeck CAK. (2006) Antibody microarray-based oncoproteomics. Expert Opin Biol Ther 6 (8), 833–838.

    CAS  Google Scholar 

  12. Ellmark P, Ingvarsson J, Carlsson A, Lundin BS, Wingren C, Borrebaeck CAK. (2006) Identification of protein expression signatures associated with Helicobacter pylori infection and gastric adenocarcinoma using recombinant antibody microarrays. Mol Cell Proteomics 5 (9), 1638–1646.

    CAS  Google Scholar 

  13. Gao WM, Kuick R, Orchekowski RP, et al. (2005) Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis. BMC Cancer 5, 110.

    Google Scholar 

  14. Sanchez-Carbayo M, Socci ND, Lozano JJ, Haab BB, Cordon-Cardo C. (2006) Profiling bladder cancer using targeted antibody arrays. Am J Pathol 168 (1), 93–103.

    CAS  Google Scholar 

  15. Wingren C, Borrebaeck CAK. (2006) Recombinant antibody microarrays. Screening. Trends Drug Discov 2, 13–15.

    Google Scholar 

  16. Wingren C, Borrebaeck CAK. (2007) Antibody microarray-based proteomics. Bioforum Europe 5, 34–35.

    Google Scholar 

  17. Angenendt P, Glokler J. (2004) Evaluation of antibodies and microarray coatings as a prerequisite for the generation of optimized antibody microarrays. Methods Mol Biol 264, 123–134.

    CAS  Google Scholar 

  18. Guilleaume B, Buness A, Schmidt C, et al. (2005) Systematic comparison of surface coatings for protein microarrays. Proteomics 5 (18), 4705–4712.

    CAS  Google Scholar 

  19. Kusnezow W, Hoheisel JD. (2003) Solid supports for microarray immunoassays. J Mol Recognit 16 (4), 165–176.

    CAS  Google Scholar 

  20. Steinhauer C, Ressine A, Marko-Varga G, Laurell T, Borrebaeck CAK, Wingren C. (2005) Biocompatibility of surfaces for antibody microarrays:design of macroporous silicon substrates. Anal. Biochem. 341 (2), 204–213.

    CAS  Google Scholar 

  21. Wingren C, Ingvarsson J, Lindstedt M, Borrebaeck CAK. (2003) Recombinant antibody microarrays–a viable option? Nat Biotechnol 21 (3), 223.

    CAS  Google Scholar 

  22. Wingren C, Montelius L, Borrebaeck CAK. (2004) Mega-dense nanoarrays —the challange of novel antibody array formats. In:Schena E, Weaver S, eds. Protein microarrays. Jones and Bartlett, Sudbury, MA, 339–352.

    Google Scholar 

  23. Ramachandran N, Hainsworth E, Bhullar B, et al. (2004) Self-assembling protein microarrays. Science 305 (5680), 86–90.

    CAS  Google Scholar 

  24. Wacker R, Niemeyer CM. (2004) DDI-microFIA —a readily configurable microarray-fluorescence immunoassay based on DNA-directed immobilization of proteins. Chembiochem 5 (4), 453–459.

    CAS  Google Scholar 

  25. Ingvarsson J, Larsson A, Sjöholm AG, et al. (2007) Design of recombinant antiody microarrays for serum protein profiling:targeting of complement proteins. J Proteome Res 6 (9), 3527–3536

    CAS  Google Scholar 

  26. Ingvarsson J, Lindstedt M, Borrebaeck CAK, Wingren C. (2006) One-step fractionation of complex proteomes enables detection of low abundant analytes using antibody-based microarrays. J Proteome Res 5 (1), 170–176.

    CAS  Google Scholar 

  27. Kusnezow W, Banzon V, Schroder C, et al. (2007) Antibody microarray-based profiling of complex specimens:systematic evaluation of labeling strategies. Proteomics 7 (11), 1786–1799

    CAS  Google Scholar 

  28. Wingren C, Ingvarsson J, Dexlin L, Szul D, Borrebaeck CAK. (2007) Design of recombinant antibody microarrays for complex proteome analysis:choice of sample labeling-tag and solid support. Proteomics 7 (17), 3055–3065.

    CAS  Google Scholar 

  29. Backmann N, Zahnd C, Huber F, et al. (2005) A label-free immunosensor array using single-chain antibody fragments. Proc Natl Acad Sci USA 102 (41), 14587–14592.

    CAS  Google Scholar 

  30. Kyo M, Usui-Aoki K, Koga H. (2005) Label-free detection of proteins in crude cell lysate with antibody arrays by a surface plasmon resonance imaging technique. Anal Chem 77 (22), 7115–7121.

    CAS  Google Scholar 

  31. Larsson C, Bramfeldt H, Wingren C, Borrebaeck CAK, Hook F. (2005) Gravimetric antigen detection utilizing antibody-modified lipid bilayers. Anal Biochem 345 (1), 72–80.

    CAS  Google Scholar 

  32. Usui-Aoki K, Shimada K, Nagano M, Kawai M, Koga H. (2005) A novel approach to protein expression profiling using antibody microarrays combined with surface plasmon resonance technology. Proteomics 5 (9), 2396–2401.

    CAS  Google Scholar 

  33. Yu X, Xu D, Cheng Q. (2006) Label-free detection methods for protein microarrays. Proteomics 6 (20), 5493–5503.

    CAS  Google Scholar 

  34. Zheng G, Patolsky F, Cui Y, Wang WU, Lieber CM. (2005) Multiplexed electrical detection of cancer markers with nanowire sensor arrays. Nat Biotechnol 23(10), 1294–1301.

    CAS  Google Scholar 

  35. Haab BB. (2005) Antibody arrays in cancer research. Mol Cell Proteomics 4 (4), 377–383.

    CAS  Google Scholar 

  36. Haab BB. (2006) Applications of antibody array platforms. Curr Opin Biotechnol 17 (4), 415–421.

    CAS  Google Scholar 

  37. Sanchez-Carbayo M. (2006) Antibody arrays: technical considerations and clinical applications in cancer. Clin Chem 52 (9), 1651–1659.

    CAS  Google Scholar 

  38. Hanash S. (2003) Disease proteomics. Nature 422 (6928), 226–232.

    CAS  Google Scholar 

  39. Hu S, Loo JA, Wong DT. (2006) Human body fluid proteome analysis. Proteomics 6 (23), 6326–6353.

    CAS  Google Scholar 

  40. Omenn GS (2006). Strategies for plasma proteomic profiling of cancers. Proteomics 6 (20), 5662–5673.

    CAS  Google Scholar 

  41. Zhu H, Bilgin M, Snyder M. (2003) Proteomics. Annu Rev Biochem 72, 783–812.

    CAS  Google Scholar 

  42. Anderson NL, Polanski M, Pieper R, et al. (2004) The human plasma proteome:a non-redundant list developed by combination of four separate sources. Mol Cell Proteomics 3 (4), 311–326.

    CAS  Google Scholar 

  43. Adkins JN, Varnum SM, Auberry KJ, et al. (2002) Toward a human blood serum proteome:analysis by multidimensional separation coupled with mass spectrometry. Mol Cell Proteomics 1 (12), 947–955.

    CAS  Google Scholar 

  44. Tirumalai RS, Chan KC, Prieto DA, Issaq HJ, Conrads TP, Veenstra TD. (2003) Characterization of the low molecular weight human serum proteome. Mol Cell Proteomics 2(10), 1096–1103.

    CAS  Google Scholar 

  45. Orchekowski R, Hamelinck D, Li L, et al. (2005) Antibody microarray profiling reveals individual and combined serum proteins associated with pancreatic cancer. 65 (23), 11193–11202.

    CAS  Google Scholar 

  46. Haab BB, Zhou H. (2004) Multiplexed protein analysis using spotted antibody microarrays. Methods Mol Biol 264, 33–45.

    CAS  Google Scholar 

  47. Geierstanger BH, Saviranta P, Brinker A. (2006) Antibody microarrays using resonance light-scattering particles for detection. Methods Mol Biol 328, 31–50.

    CAS  Google Scholar 

  48. Angenendt P, Lehrach H, Kreutzberger J, Glokler J. (2005) Subnanoliter enzymatic assays on microarrays. Proteomics 5 (2), 420–425.

    CAS  Google Scholar 

  49. Angenendt P, Nyarsik L, Szaflarski W, et al. (2004) Cell-free protein expression and functional assay in nanowell chip format. Anal Chem 76 (7), 1844–1849.

    CAS  Google Scholar 

  50. Bruckbauer A, Zhou D, Kang DJ, Korchev YE, Abell C, Klenerman D. (2004) An addressable antibody nanoarray produced on a nanostructured surface. J Am Chem Soc 126 (21), 6508–6509.

    CAS  Google Scholar 

  51. Ghatnekar-Nilsson S, Dexlin L, Wingren C, Montelius L, Borrebaeck CAK. (2007) Design of atto-vial based recombinant antibody arrays combined with a planar waveguide detection system. Proteomics 7 (4), 540–547.

    CAS  Google Scholar 

  52. Poetz O, Schwenk JM, Kramer S, Stoll D, Templin MF, Joos TO. (2005) Protein microarrays:catching the proteome. Mech Ageing Dev 126 (1), 161–170.

    CAS  Google Scholar 

  53. Szodoray P, Alex P, Brun JG, Centola M, Jonsson R. (2004) Circulating cytokines in primary Sjogren's syndrome determined by a multiplex cytokine array system. Scand J Immunol 59 (6), 592–599.

    CAS  Google Scholar 

  54. Warren EN, Elms PJ, Parker CE, Borchers CH. (2004) Development of a protein chip:a MS-based method for quantitation of protein expression and modification levels using an immunoaffinity approach. Anal Chem 76 (14), 4082–4092.

    CAS  Google Scholar 

  55. Haab BB. (2005) Multiplexed protein analysis using antibody microarrays and label-based detection. Methods Mol Med 114, 183–194.

    CAS  Google Scholar 

  56. Pavlickova P, Schneider EM, Hug H. (2004) Advances in recombinant antibody microarrays. Clin Chim Acta 343 (1–2), 17–35.

    CAS  Google Scholar 

  57. Bernard A, Michel B, Delamarche E. (2001) Micromosaic immunoassays. Anal Chem 73(1), 8–12.

    CAS  Google Scholar 

  58. Juncker D, Schmid H, Delamarche E. (2005) Multipurpose microfluidic probe. Nat Mater 4(8), 622–628.

    CAS  Google Scholar 

  59. Nath P, Roy S, Conlisk T, Fleischman AJ. (2005) A system for micro/nano fluidic flow diagnostics. Biomed Microdevices 7 (3), 169–177.

    Google Scholar 

  60. Situma C, Hashimoto M, Soper SA.(2006) Merging microfluidics with microarray-based bioassays. Biomol Eng 23(5), 213–231.

    CAS  Google Scholar 

  61. Wolf M, Juncker D, Michel B, Hunziker P, Delamarche E.(2004) Simultaneous detection of C-reactive protein and other cardiac markers in human plasma using micromosaic immunoassays and self-regulating microfluidic networks. Biosens Bioelectron 19(10), 1193–1202.

    CAS  Google Scholar 

  62. Lv LL, Liu BC, Zhang CX, Tang ZM, Zhang L, Lu ZH.(2007) Construction of an antibody microarray based on agarose-coated slides. Electrophoresis 28(3), 406–413.

    CAS  Google Scholar 

  63. Ressine A, Ekstrom S, Marko-Varga G, Laurell T.(2003) Macro-/nanoporous silicon as a support for high-performance protein microarrays. Anal Chem 75(24), 6968–6974.

    CAS  Google Scholar 

  64. Rucker VC, Havenstrite KL, Simmons BA, Sickafoose SM, Herr AE, Shediac R.(2005) Functional antibody immobilization on 3-dimensional polymeric surfaces generated by reactive ion etching. Langmuir 21(17), 7621–7625.

    CAS  Google Scholar 

  65. Wolter A, Niessner R, Seidel M.(2007) Preparation and characterization of functional poly(ethylene glycol) surfaces for the use of antibody microarrays. Anal Chem 79(12), 4529–4537

    CAS  Google Scholar 

  66. Wingren C, Borrebaeck CAK.(2008) Protein microarray technologies for detection and identification of bacterial and protein analytes. In:Zourob M, Elwary S, Turner A, eds. Principles of bacterial detection:biosensors recognition receptors and microsystems. Springer, Berlin.

    Google Scholar 

  67. Campbell CJ, O'Looney N, Kwan MC, et al.(2006) Cell interaction microarray for blood phenotyping. Anal Chem 78(6), 1930–1938.

    CAS  Google Scholar 

  68. Song S, Li B, Wang L, et-al..(2007) A cancer protein microarray platform using antibody fragments and its clinical applications. Mol Biosyst 3(2), 151–158.

    CAS  Google Scholar 

  69. MacBeath G.(2002) Protein microarrays and proteomics. Nat. Genet. 32 Suppl, 526–532.

    CAS  Google Scholar 

  70. Soderlind E, Strandberg L, Jirholt P, et al.(2000) Recombining germline-derived CDR sequences for creating diverse single-framework antibody libraries. Nat Biotechnol 18(8), 852–856.

    CAS  Google Scholar 

  71. Steinhauer C, W ingr en C, Hager AC, Borrebaeck CAK.(2002) Single framework recombinant antibody fragments designed for protein chip applications. Biotechniques Suppl 38–45.

    Google Scholar 

  72. Cheng MM, Cuda G, Bunimovich YL, et al.(2006) Nanotechnologies for biomolecular detection and medical diagnostics. Curr Opin Chem Biol 10(1), 11–19.

    CAS  Google Scholar 

  73. Ivanov YD, Govorun VM, Bykov VA, Archakov AI.(2006) Nanotechnologies in proteomics. Proteomics 6(5), 1399–1414.

    CAS  Google Scholar 

  74. Montelius L.(2006) Nanotechnology for biomedical devices. In:Kumar CSRR, ed. Nanodevices for life sciences. Wiley, Weinheim, Chapter 12.

    Google Scholar 

  75. Hoff JD, Cheng LJ, Meyhofer E, Guo LJ, Hunt AJ.(2004) Nanoscale protein patterning by imprint litography. Nano Lett 4(5), 853–858.

    CAS  Google Scholar 

  76. Lee KB, Park SJ, Mirkin CA, Smith JC, Mrksich M.(2002) Protein nanoarrays generated by dip-pen nanolithography. Science 295(5560), 1702–1705.

    CAS  Google Scholar 

  77. Zhang GJ, Tanii T, Kanari Y, Ohdomari I. (2007) Production of nanopatterns by a combination of electron beam lithography and a self-assembled monolayer for an antibody nanoarray. J Nanosci Nanotechnol 7(2), 410–417.

    Google Scholar 

  78. Dietrich HR, Knoll J, van den Doel LR, et al. (2004) Nanoarrays:a method for performing enzymatic assays. Anal Chem 76(14), 4112–4117.

    CAS  Google Scholar 

  79. Angenendt P, Wilde J, Kijanka G, et al.(2004) Seeing better through a MIST:evaluation of monoclonal recombinant antibody fragments on microarrays. Anal Chem 76(10), 2916–2921.

    CAS  Google Scholar 

  80. Gamby J, Abid JP, Abid M, Ansermet JP, Girault HH.(2006) Nanowires network for biomolecular detection using contactless impedance tomoscopy technique. Anal Chem 78(15), 5289–5295.

    CAS  Google Scholar 

  81. Pal S, Alocilja EC, Downes FP.(2007) Nanowire labeled direct-charge transfer biosensor for detecting Bacillus species. Biosens Bioelectron 22(9–10), 2329–2336.

    CAS  Google Scholar 

  82. Tamiya E, Zhi ZL, Morita Y, Hasan Q. (2005) Nanosystems for biosensing:multianalyte immunoassay on a protein chip. Methods Mol Biol 300, 369–381.

    CAS  Google Scholar 

  83. Pammer P, Schlapak R, Sonnleitner M, et al. (2005) Nanopatterning of biomolecules with microscale beads. Chemphyschem 6(5), 900–903.

    CAS  Google Scholar 

  84. Endo T, Kerman K, Nagatani N, et al.(2006) Multiple label-free detection of antigen—antibody reaction using localized surface plasmon resonance-based core–shell structured nano-particle layer nanochip. Anal Chem 78(18), 6465–6475.

    CAS  Google Scholar 

  85. Arntz Y, Seelig JD, Lang HP, et al.(2003) Label-free protein assay based on a nanomechanical cantilever array. Nanotechnology 14, 86–90.

    CAS  Google Scholar 

  86. Dutta P, Tipple CA, Lavrik NV, et al.(2003) Enantioselective sensors based on antibody-mediated nanomechanics. Anal Chem 75(10), 2342–2348.

    CAS  Google Scholar 

  87. Ji HF, Yang X, Zhang J, Thundat T.(2004) Molecular recognition of biowarfare agents using micromechanical sensors. Expert Rev Mol Diagn 4(6), 859–866.

    CAS  Google Scholar 

  88. Weeks BL, Camarero J, Noy A, Miller AE, Stanker L, De Yoreo JJ.(2003) A microcantilever-based pathogen detector. Scanning 25(6), 297–299.

    CAS  Google Scholar 

  89. Steinhauer C, Wingren C, Khan F, He M, Taussig MJ, Borrebaeck CAK.(2006) Improved affinity coupling for antibody microarrays:engineering of double-(His)6-tagged single framework recombinant antibody fragments. Proteomics 6(15), 4227–4234.

    CAS  Google Scholar 

  90. Wacker R, Schroder H, Niemeyer CM(2004) Performance of antibody microarrays fabricated by either DNA-directed immobilization, direct spotting, or streptavidin-biotin attachment:a comparative study. Anal. Bochem. 330(2), 281–287.

    CAS  Google Scholar 

  91. Buxboim A, Bar-Dagan M, Frydman V, Zbaida D, Morpurgo M, Bar-Ziv R.(2007) A single-step photolithographic interface for cell-free gene expression and active biochips. Small (Weinheim an der Bergstrasse, Germany) 3(3), 500–510.

    CAS  Google Scholar 

  92. He M, Taussig MJ.(2001) Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation(PISA method). Nucleic Acids Res 29(15), E73.

    CAS  Google Scholar 

  93. Blattler T, Huwiler C, Ochsner M, et al. (2006) Nanopatterns with biological functions. J. Nanosci. Nanotechnol. 6(8), 2237–2264.

    CAS  Google Scholar 

  94. Borini S, D'Auria S, Rossi M, Rossi AM. (2005) Writing 3D protein nanopatterns onto a silicon nanosponge. Lab Chip 5(10), 1048–1052.

    CAS  Google Scholar 

  95. Gu J, Yam CM, Li S, Cai C.(2004) Nanometric protein arrays on protein-resistant monolayers on silicon surfaces. J Am Chem Soc 126(26), 8098–8099.

    CAS  Google Scholar 

  96. Agarwal G, Naik RR, Stone MO.(2003) Immobilization of histidine-tagged proteins on nickel by electrochemical dip pen nanolithography. J Am Chem Soc 125(24), 7408–7412.

    CAS  Google Scholar 

  97. Lee M, Kang DK, Yang HK, et al.(2006) Protein nanoarray on Prolinker surface constructed by atomic force microscopy dip-pen nanolithography for analysis of protein interaction. Proteomics 6(4), 1094–1103.

    CAS  Google Scholar 

  98. Nam JM, Han SW, Lee KB, Liu X, Ratner MA, Mirkin CA.(2004) Bioactive protein nanoarrays on nickel oxide surfaces formed by dip-pen nanolithography. Angew Chemie Int Ed 43(10), 1246–1249.

    CAS  Google Scholar 

  99. Lynch M, Mosher C, Huff J, Nettikadan S, Johnson J, Henderson E.(2004) Functional protein nanoarrays for biomarker profiling. Proteomics 4(6), 1695–1702.

    CAS  Google Scholar 

  100. Nettikadan S, Radke K, Johnson J, et al. (2006) Detection and quantification of protein biomarkers from fewer than 10 cells. Mol Cell Proteomics 5(5), 895–901.

    CAS  Google Scholar 

  101. Belov L, de la Vega O, dos Remedios CG, Mulligan SP, Christopherson RI(2001) Immunophenotyping of leukemias using a cluster of differentiation antibody microarray. Cancer Res 61(11), 4483–4489.

    CAS  Google Scholar 

  102. Belov L, Huang P, Barber N, Mulligan SP, Christopherson RI.(2003) Identification of repertoires of surface antigens on leukemias using an antibody microarray. Proteomics 3(11), 2147–2154.

    CAS  Google Scholar 

  103. Belov L, Huang P, Chrisp JS, Mulligan SP, Christopherson RI.(2005) Screening microarrays of novel monoclonal antibodies for binding to T-, B- and myeloid leukaemia cells. J Immunol Methods 305(1), 10–19.

    CAS  Google Scholar 

  104. Belov L, Mulligan SP, Barber N, et al.(2006) Analysis of human leukaemias and lymphomas using extensive immunophenotypes from an antibody microarray. Br J Haematol 135(2), 184–197.

    CAS  Google Scholar 

  105. Deviren G, Gupta K, Paulaitis ME, Schneck JP.(2007) Detection of antigen-specific T cells on p/MHC microarrays. J Mol Recognit 20(1), 32–38.

    CAS  Google Scholar 

  106. Ellmark P, Belov L, Huang P, et-al..(2006) Multiplex detection of surface molecules on colorectal cancers. Proteomics 6(6), 1791–1802.

    CAS  Google Scholar 

  107. Ko IK, Kato K, Iwata H.(2005) Parallel analysis of multiple surface markers expressed on rat neural stem cells using antibody microarrays. Biomaterials 26(23), 4882–4891.

    CAS  Google Scholar 

  108. Ko IK, Kato K, Iwata H.(2005) Antibody microarray for correlating cell phenotype with surface marker. Biomaterials 26(6), 687–696.

    CAS  Google Scholar 

  109. Wingren C, Steinhauer C, Ingvarsson J, Persson E, Larsson K, Borrebaeck CAK(2005) Microarrays based on affinity-tagged single-chain Fv antibodies:sensitive detection of analyte in complex proteomes. Proteomics 5(5), 1281–1291.

    CAS  Google Scholar 

  110. Haab BB, Geierstanger BH, Michailidis G, et al.(2005) Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: systematic variation between sample types and calibration of mass spectrometry data. Proteomics 5(13), 3278–3291.

    CAS  Google Scholar 

  111. Wilkins MR, Appel RD, Van Eyk JE, et al. (2006) Guidelines for the next 10 years of proteomics. Proteomics 6(1), 4–8.

    CAS  Google Scholar 

  112. Huang RP, Huang R, Fan Y, Lin Y.(2001) Simultaneous detection of multiple cytokines from conditioned media and patient's sera by an antibody-based protein array system. Anal Biochem 294(1), 55–62.

    CAS  Google Scholar 

  113. Haab BB, Lizardi PM.(2006) RCA-enhanced protein detection arrays. Methods Mol Biol 328, 15–29.

    CAS  Google Scholar 

  114. Ogasawara D, Hirano Y, Yasukawa T, et al. (2006) Electrochemical microdevice with separable electrode and antibody chips for simultaneous detection of pepsinogens 1 and 2. Biosens Bioelectron 21(9), 1784–1790.

    CAS  Google Scholar 

  115. Finnskog D, Jaras K, Ressine A, et al.(2006) High-speed biomarker identification utilizing porous silicon nanovial arrays and MAL-DI-TOF mass spectrometry. Electrophoresis 27(5–6), 1093–1103.

    CAS  Google Scholar 

  116. Finnskog D, Ressine A, Laurell T, Marko-Varga G.(2004) Integrated protein microchip assay with dual fluorescent- and MALDI read-out. J Proteome Res 3(5), 988–994.

    CAS  Google Scholar 

  117. Gavin IM, Kukhtin A, Glesne D, Schabacker D, Chandler DP.(2005) Analysis of protein interaction and function with a 3-dimensional MALDI-MS protein array. Biotechniques 39(1), 99–107.

    CAS  Google Scholar 

  118. Koga H, Kyo M, Usui-Aoki K, Inamori K. (2006) A chip-based miniaturized format for protein-expression profiling:the exploitation of comprehensively produced antibodies.Electrophoresis 27(18),3676–3683.

    CAS  Google Scholar 

  119. Kim M, Jung SO, Park K, et al.(2005) Detection of Bax protein conformational change using a surface plasmon resonance imaging-based antibody chip. Biochem Biophys Res Commun 338(4), 1834–1838.

    CAS  Google Scholar 

  120. Lee HJ, Nedelkov D, Corn RM.(2006) Surface plasmon resonance imaging measurements of antibody arrays for the multiplexed detection of low molecular weight protein biomarkers. Anal Chem 78(18), 6504–6510.

    CAS  Google Scholar 

  121. Hamelinck D, Zhou H, Li L, et al.(2005) Optimized normalization for antibody microarrays and application to serum-protein profiling. Mol Cell Proteomics 4(6), 773–784.

    CAS  Google Scholar 

  122. Andersson O, Kozlowski M, Garachtchenko T, et al.(2005) Determination of relative protein abundance by internally normalized ratio algorithm with antibody arrays. J Proteome Res 4(3), 758–767.

    CAS  Google Scholar 

  123. Olle EW, Sreekumar A, Warner RL, et al. (2005) Development of an internally controlled antibody microarray. Mol Cell Proteomics 4(11), 1664–1672.

    CAS  Google Scholar 

  124. Cai M, Yin W, Li Q, et al.(2006) Effects of NO-1886 on inflammation-associated cytokines in high-fat/high-sucrose/high-cholesterol diet-fed miniature pigs. Eur J Pharmacol 540(1–3), 139–146.

    CAS  Google Scholar 

  125. Celis JE, Moreira JM, Cabezon T, et al. (2005) Identification of extracellular and intracellular signaling components of the mammary adipose tissue and its interstitial fluid in high risk breast cancer patients:toward dissecting the molecular circuitry of epithelial-adipocyte stromal cell interactions. Mol Cell Proteomics 4(4), 492–522.

    CAS  Google Scholar 

  126. Hudelist G, Singer CF, Kubista E, Czerwenka K.(2005) Use of high-throughput arrays for profiling differentially expressed proteins in normal and malignant tissues. Anticancer Drugs 16(7), 683–689.

    CAS  Google Scholar 

  127. Knezevic V, Leethanakul C, Bichsel VE, et al.(2001) Proteomic profiling of the cancer microenvironment by antibody arrays. Proteomics 1(10), 1271–1278.

    CAS  Google Scholar 

  128. Sreekumar A, Nyati MK, Varambally S, et al.(2001) Profiling of cancer cells using protein microarrays:discovery of novel radiation-regulated proteins. Cancer Res 61(20), 7585–7593.

    CAS  Google Scholar 

  129. Anjum MF, Tucker JD, Sprigings KA, Woodward MJ, Ehricht R.(2006) Use of miniaturized protein arrays for Escherichia coli O serotyping. Clin Vaccine Immunol 13(5), 561–567.

    CAS  Google Scholar 

  130. Cai HY, Lu L, Muckle CA, Prescott JF, Chen S.(2005) Development of a novel protein microarray method for serotyping Salmonella enterica strains. J Clin Microbiol 43(7), 3427–3430.

    CAS  Google Scholar 

  131. Flores-Delgado G, Liu CW, Sposto R, Berndt N.(2007) A limited screen for protein interactions reveals new roles for protein phosphatase 1 in cell cycle control and apoptosis. J Proteome Res 6(3), 1165–1175.

    CAS  Google Scholar 

  132. Gembitsky DS, Lawlor K, Jacovina A, Yaneva M, Tempst P.(2004) A prototype antibody microarray platform to monitor changes in protein tyrosine phosphorylation. Mol Cell Proteomics 3(11), 1102–1118.

    CAS  Google Scholar 

  133. Buechler KF, Moi S, Noar B, et al.(1992) Simultaneous detection of seven drugs of abuse by the Triage panel for drugs of abuse. Clin Chem 38(9), 1678–1684.

    CAS  Google Scholar 

  134. Mitchell AM, Brown MD, Menown IB, Kline JA.(2005) Novel protein markers of acute coronary syndrome complications in low-risk outpatients:a systematic review of potential use in the emergency department. Clin Chem 51(11), 2005–2012.

    CAS  Google Scholar 

  135. Wu AH, Smith A, Christenson RH, Murakami MM, Apple FS.(2004) Evaluation of a point-of-care assay for cardiac markers for patients suspected of acute myocardial infarction. Clin Chim Acta 346(2), 211–219.

    CAS  Google Scholar 

  136. Chen S, Laroche T, Hamelinck D, et al. (2007) Multiplexed analysis of glycan variation on native proteins captured by antibody microarrays. Nat Methods 4(5), 437–444.

    CAS  Google Scholar 

  137. Ahn EH, Kang DK, Chang SI, Kang CS, Han MH, Kang IC.(2006) Profiling of differential protein expression in angiogenin-induced HUVECs using antibody-arrayed ProteoChip. Proteomics 6(4), 1104–1109.

    CAS  Google Scholar 

  138. Bartling B, Hofmann HS, Boettger T, et al. (2005) Comparative application of antibody and gene array for expression profiling in human squamous cell lung carcinoma. Lung Cancer 49(2), 145–154.

    Google Scholar 

  139. Duffy HS, Iacobas I, Hotchkiss K, et al. (2007) The gap junction protein connexin32 interacts with the Src homology 3/ Hook domain of discs large homolog 1. J Biol Chem 282(13), 9789–9796.

    CAS  Google Scholar 

  140. Ghobrial IM, McCormick DJ, Kaufmann SH, et-al..(2005) Proteomic analysis of mantle-cell lymphoma by protein microarray. Blood 105(9), 3722–3730.

    CAS  Google Scholar 

  141. Hung KE, Kho AT, Sarracino D, et al. (2006) Mass spectrometry-based study of the plasma proteome in a mouse intestinal tumor model. J Proteome Res 5(8), 1866–1878.

    CAS  Google Scholar 

  142. Lin Y, Huang R, Chen L, et al.(2004) Identification of interleukin-8 as estrogen receptor-regulated factor involved in breast cancer invasion and angiogenesis by protein arrays. Int J Cancer 109(4), 507–515.

    CAS  Google Scholar 

  143. Lin Y, Wang SM, Lu WM, Huang RP. (2005) [Effect of interleukin-8 in cell invasion and proliferation of human breast cancer]. Zhonghua Wai Ke Za Zhi; 43(23), 1541–1544.

    Google Scholar 

  144. Mor G, Visintin I, Lai Y, et al.(2005) Serum protein markers for early detection of ovarian cancer. Proc Natl Acad Sci USA 102(21), 7677–7682.

    CAS  Google Scholar 

  145. Shafer MW, Mangold L, Partin AW, Haab BB.(2007) Antibody array profiling reveals serum TSP-1 as a marker to distinguish benign from malignant prostatic disease. Prostate 67(3), 255–267.

    Google Scholar 

  146. Smith L, Watson MB, O'Kane SL, Drew PJ, Lind MJ, Cawkwell L.(2006) The analysis of doxorubicin resistance in human breast cancer cells using antibody microarrays. Mol Cancer Ther 5(8), 2115–2120.

    CAS  Google Scholar 

  147. Vazquez-Martin A, Colomer R, Menendez JA.(2007) Protein array technology to detect HER2(erbB-2)-induced ‘cytokine signature’ in breast cancer. Eur J Cancer 43(7), 1117–1124.

    CAS  Google Scholar 

  148. Zhou H, Bouwman K, Schotanus M, et al. (2004) Two-color, rolling-circle amplification on antibody microarrays for sensitive, multiplexed serum-protein measurements. Genome Biol 5(4), R28.

    Google Scholar 

  149. Miller JC, Zhou H, Kwekel J, et al.(2003) Antibody microarray profiling of human prostate cancer sera:antibody screening and identification of potential biomarkers. Proteomics 3(1), 56–63.

    CAS  Google Scholar 

  150. Tannapfel A, Anhalt K, Hausermann P, et al. (2003) Identification of novel proteins associated with hepatocellular carcinomas using protein microarrays. J Pathol 201(2), 238–249.

    CAS  Google Scholar 

  151. Fujita O, Asanuma M, Yokoyama T, Miyazaki I, Ogawa N, Kumon H.(2006) Involvement of STAT3 in bladder smooth muscle hypertrophy following bladder outlet obstruction. Acta Med Okayama 60(6), 299–309.

    CAS  Google Scholar 

  152. De Ceuninck F, Dassencourt L, Anract P. (2004) The inflammatory side of human chondrocytes unveiled by antibody microarrays. Biochem Biophys Res Commun 323(3), 960–969.

    Google Scholar 

  153. Kato K, Toda M, Iwata H.(2007) Antibody arrays for quantitative immunophenotyping. Biomaterials 28(6), 1289–1297.

    CAS  Google Scholar 

  154. Kopf E, Shnitzer D, Zharhary D.(2005) Panorama Ab microarray cell signaling kit:a unique tool for protein expression analysis. Proteomics 5(9), 2412–2416.

    CAS  Google Scholar 

  155. Tuomisto TT, Riekkinen MS, Viita H, Levonen AL, Yla-Herttuala S.(2005) Analysis of gene and protein expression during monocyte-macrophage differentiation and cholesterol loading—cDNA and protein array study. Atherosclerosis 180(2), 283–291.

    CAS  Google Scholar 

  156. Turtinen LW, Prall DN, Bremer LA, Nauss RE, Hartsel SC.(2004) Antibody array-generated profiles of cytokine release from THP-1 leukemic monocytes exposed to different amphotericin B formulations. Antimicrob Agents Chemother 48(2), 396–403.

    CAS  Google Scholar 

  157. Bereczki E, Gonda S, Csont T, et al.(2007) Overexpression of biglycan in the heart of transgenic mice:an antibody microarray study. J Proteome Res 6(2), 854–861.

    CAS  Google Scholar 

  158. Srivastava M, Eidelman O, Jozwik C, et al. (2006) Serum proteomic signature for cystic fibrosis using an antibody microarray platform. Mol Genet Metab 87(4), 303–310.

    CAS  Google Scholar 

  159. Madan M, Bishayi B, Hoge M, Messas E, Amar S.(2007) Doxycycline affects diet- and bacteria-associated atherosclerosis in an ApoE heterozygote murine model:cytokine profiling implications. Atherosclerosis 190(1), 62–72.

    CAS  Google Scholar 

  160. Sharma M, Arnason JT, Burt A, Hudson JB. (2006) Echinacea extracts modulate the pattern of chemokine and cytokine secretion in rhinovirus-infected and uninfected epithelial cells. Phytother Res 20(2), 147–152.

    CAS  Google Scholar 

  161. Kader HA, Tchernev VT, Satyaraj E, et al. (2005) Protein microarray analysis of disease activity in pediatric inflammatory bowel disease demonstrates elevated serum PLGF, IL-7, TGF-beta1, and IL-12p40 levels in Crohn's disease and ulcerative colitis patients in remission versus active disease. Am J Gastroenterol 100(2), 414–423.

    CAS  Google Scholar 

  162. Yee SB, Bourdi M, Masson MJ, Pohl LR. (2007) Hepatoprotective role of endogenous interleukin-13 in a murine model of acetaminophen-induced liver disease. Chem Res Toxicol 20(5), 734–744.

    CAS  Google Scholar 

  163. Izzotti A, Bagnasco M, Cartiglia C, Longobardi M, De Flora S.(2004) Proteomic analysis as related to transcriptome data in the lung of chromium(VI)-treated rats. Int J Oncol 24(6), 1513–1522.

    CAS  Google Scholar 

  164. Gehring AG, Albin DM, Bhunia AK, Reed SA, Tu SI, Uknalis J.(2006) Antibody microarray detection of Escherichia coli O157:H7:quantification, assay limitations, and capture efficiency. Anal Chem 78(18), 6601–6607.

    CAS  Google Scholar 

  165. Rucker VC, Havenstrite KL, Herr AE. (2005) Antibody microarrays for native toxin detection. Anal Biochem 339(2), 262–270.

    CAS  Google Scholar 

  166. Zhou Q, Desta T, Fenton M, Graves DT, Amar S.(2005) Cytokine profiling of macrophages exposed to Porphyromonas gingivalis, its lipopolysaccharide, or its FimA protein. Infection Immunity 73(2), 935–943.

    CAS  Google Scholar 

  167. Delehanty JB, Ligler FS.(2002) A microarray immunoassay for simultaneous detection of proteins and bacteria. Anal Chem 74(21), 5681–5687.

    CAS  Google Scholar 

  168. Grow AE, Wood LL, Claycomb JL, Thompson PA.(2003) New biochip technology for label-free detection of pathogens and their toxins. J Microbiol Methods 53(2), 221–233.

    CAS  Google Scholar 

  169. Huang TT, Sturgis J, Gomez R, et al.(2003) Composite surface for blocking bacterial adsorption on protein biochips. Biotechnol Bioeng 81(5), 618–624.

    CAS  Google Scholar 

  170. Ligler FS, Taitt CR, Shriver-Lake LC, Sapsford KE, Shubin Y, Golden JP.(2003) Array biosensor for detection of toxins. Anal Bioanal Chem 377(3), 469–477.

    CAS  Google Scholar 

  171. Rowe CA, Tender LM, Feldstein MJ, et al. (1999) Array biosensor for simultaneous identification of bacterial, viral, and protein analytes. Anal Chem 71(17), 3846–3852.

    CAS  Google Scholar 

  172. Rowe-Taitt CA, Golden JP, Feldstein MJ, Cras JJ, Hoffman KE, Ligler FS.(2000) Array biosensor for detection of biohazards. Biosens Bioelectron 14(10–11), 785–794.

    CAS  Google Scholar 

  173. Rubina AY, Dyukova VI, Dementieva EI, et-al..(2005) Quantitative immunoassay of biotoxins on hydrogel-based protein microchips. Anal Biochem 340(2), 317–329.

    CAS  Google Scholar 

  174. Taitt CR, Anderson GP, Lingerfelt BM, Feldstein MJ, Ligler FS.(2002) Nine-analyte detection using an array-based biosensor. Anal Chem 74(23), 6114–6120.

    CAS  Google Scholar 

  175. Wadkins RM, Golden JP, Pritsiolas LM, Ligler FS.(1998) Detection of multiple toxic agents using a planar array immunosensor. Biosens Bioelectron 13(3–4), 407–415.

    CAS  Google Scholar 

  176. Kaukola T, Satyaraj E, Patel DD, et-al.. (2004) Cerebral palsy is characterized by protein mediators in cord serum. Ann Neurol 55(2), 186–194.

    CAS  Google Scholar 

  177. Krishnan C, Kaplin AI, Graber JS, Darman JS, Kerr DA.(2005) Recurrent transverse myelitis following neurobrucellosis:immunologic features and beneficial response to immunosuppression. J Neurovirol 11(2), 225–231.

    CAS  Google Scholar 

  178. Sokolov BP, Cadet JL.(2006) Methamphetamine causes alterations in the MAP kinase-related pathways in the brains of mice that display increased aggressiveness. Neuropsychopharmacology 31(5), 956–966.

    CAS  Google Scholar 

  179. Wang CC, Yim KW, Poon TC, et al.(2007) Innate immune response by ficolin binding in apoptotic placenta is associated with the clinical syndrome of preeclampsia. Clin Chem 53(1), 42–52.

    CAS  Google Scholar 

  180. Bodet C, Andrian E, Tanabe SI, Grenier D. (2007) Actinobacillus actinomycetemcomitans lipopolysaccharide regulates matrix metalloproteinase, tissue inhibitors of matrix metalloproteinase, and plasminogen activator production by human gingival fibroblasts:a potential role in connective tissue destruction. J Cell Physiol 212(1), 189–194.

    CAS  Google Scholar 

  181. Han MK, Hong MY, Lee D, et-al..(2006) Expression profiling of proteins in l -threo-nine biosynthetic pathway of Escherichia coli by using antibody microarray. Proteomics 6(22), 5929–5940.

    CAS  Google Scholar 

  182. Ivanov SS, Chung AS, Yuan ZL, et al.(2004) Antibodies immobilized as arrays to profile protein post-translational modifications in mammalian cells. Mol Cell Proteomics 3(8), 788–795.

    CAS  Google Scholar 

  183. Gaudet S, Janes KA, Albeck JG, Pace EA, Lauffenburger DA, Sorger PK.(2005) A compendium of signals and responses triggered by prodeath and prosurvival cytokines. Mol Cell Proteomics 4(10), 1569–1590.

    CAS  Google Scholar 

  184. Jang JH, Hanash S.(2003) Profiling of the cell surface proteome. Proteomics 3(10), 1947–1954.

    CAS  Google Scholar 

  185. Lundberg K, Lindstedt M, Larsson K, Dexlin L, Wingren C, Ohlin M, Greiff L, Borrebaeck CAK.(2008) Augmented Phl p 5-specific Th2 response after exposure of dendritic cells to allergen in complex with specific IgE compared to IgG1 and IgG4. Clin Immunol 128(3), 358–365.

    CAS  Google Scholar 

  186. Carlsson A, Wingren C, Ingvarsson J, Ellmark P, Baldertorp B, Fernö M, Olsson H, Borrebaeck CAK.(2008) Serum proteome profiling of metastatic breast cancer using recombinant antibody microarrays. Eur J Cancer 44(3), 472–480.

    CAS  Google Scholar 

  187. Ingvarsson J, Wingren C, Carlsson A, Ellmark P, Wahren B, Engström G, Harmenberg U, Krogh M, Peterson C, Borrebaeck CAK.(2008) Detection of pancreatic cancer using antibody microarray-based serum protein profiling. Proteomics 8(11), 2211–2214.

    CAS  Google Scholar 

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Acknowledgments

This study was supported by grants from the Swedish National Science Council (VR-NT) and SSF, Strategic Center for Translational Cancer Research (CREATE Health) (www.createhealth.lth.se).

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Wingren, C., Borrebaeck, C.A. (2009). Antibody-Based Microarrays. In: Bilitewski, U. (eds) Microchip Methods in Diagnostics. Methods in Molecular Biology™, vol 509. Humana Press. https://doi.org/10.1007/978-1-59745-372-1_5

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  • DOI: https://doi.org/10.1007/978-1-59745-372-1_5

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